PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 156aa    MW: 17855.2 Da    PI: 9.8646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-071351339
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39
                            +W+  Ed+l+  a   +  g   +W++Ia+ ++ gR++ +
  GSMUA_Achr11P09110_001 13 PWSRAEDKLFETALVVYSEGtpdRWSAIAEQLP-GRSAAE 51
                            8*****************99*************.***976 PP
2Myb_DNA-binding46.77.1e-1577121347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ l++++  ++G+g+W+ I+r   k+Rt+ q+ s+ qk+
  GSMUA_Achr11P09110_001  77 PWTEEEHRLFLEGLSKYGKGDWRNISRWAVKTRTPTQVASHAQKF 121
                             8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.6E-61062IPR001005SANT/Myb domain
SuperFamilySSF466896.71E-121061IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-71260IPR009057Homeodomain-like
PROSITE profilePS500907.3641360IPR017877Myb-like domain
PfamPF002497.9E-61355IPR001005SANT/Myb domain
CDDcd001676.82E-51360No hitNo description
PROSITE profilePS5129420.34570126IPR017930Myb domain
SuperFamilySSF466894.14E-1872126IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-1773125IPR006447Myb domain, plants
SMARTSM007173.3E-1074124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-1276117IPR009057Homeodomain-like
CDDcd001676.38E-1077122No hitNo description
PfamPF002491.8E-1177120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MFSGQQLAGV PRPWSRAEDK LFETALVVYS EGTPDRWSAI AEQLPGRSAA EAWERYQALV  60
HDCDMIERGM ERKRGVPWTE EEHRLFLEGL SKYGKGDWRN ISRWAVKTRT PTQVASHAQK  120
FFIRQSQNAG KSRETKRKSI HDITCPSPSS SMSCLK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382952.11e-96PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-42DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0RQP11e-113M0RQP1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09110_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-48MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]