PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 270aa    MW: 29829.9 Da    PI: 10.3838
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind31.55.1e-101991104
               GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalaernkalverdnkllal 84 
                             mdddg    rn+gyyep+   k nlgl+lmss  e+dak+  +n+ +++++ ++ e    ++f ++d ++++ n++    +n ++  
  GSMUA_Achr11P09440_001   1 MDDDGGLGiRNWGYYEPS--SKGNLGLRLMSSTVEQDAKPLLSNAGFIHRHCSIPEPTapVDF-MSDGWFHHSNDNS---KNDYVRD 81 
                             999999999*******99..799***************************9999765545899.99*****944432...3333333 PP

               GAGA_bind  85 llvenslasalpvgvqvlsg 104
                              l+++s +  ++++ ++l+ 
  GSMUA_Achr11P09440_001  82 GLMRHSNN--NSKNLHILPT 99 
                             33333322..2222333333 PP
2GAGA_bind266.41.6e-81108270136301
               GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
                              +  +++++++ +  kk+ r++ +k +k+kk+kk  +++k++v++ sa ++ k+ +ks+++v+ng+++D s++P+PvCsCtG+++qC
  GSMUA_Achr11P09440_001 108 SVLPEPPTIEN-SPLKKTPRSSAQKPPKTKKPKKV-TAPKDEVANGSA-SHGKSGRKSTGMVINGINFDMSRIPTPVCSCTGKQQQC 191
                             33334444444.44555777888889999999994.567677777665.799*********************************** PP

               GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                             Y+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DL+++WAkHGtnkfvtir
  GSMUA_Achr11P09440_001 192 YRWGIGGWQSACCTTSVSIYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRTFWAKHGTNKFVTIR 270
                             ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.9E-1271270IPR010409GAGA-binding transcriptional activator
PfamPF062171.3E-961270IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDDDGGLGIR NWGYYEPSSK GNLGLRLMSS TVEQDAKPLL SNAGFIHRHC SIPEPTAPVD  60
FMSDGWFHHS NDNSKNDYVR DGLMRHSNNN SKNLHILPTS HQHHPTYSVL PEPPTIENSP  120
LKKTPRSSAQ KPPKTKKPKK VTAPKDEVAN GSASHGKSGR KSTGMVINGI NFDMSRIPTP  180
VCSCTGKQQQ CYRWGIGGWQ SACCTTSVSI YPLPMSTKRR GARIAGRKMS QGAFKKVLEK  240
LAGEGYNLSN PIDLRTFWAK HGTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382984.10.0PREDICTED: protein Barley B recombinant-like isoform X2
SwissprotQ8GUC31e-78BBR_HORVU; Protein Barley B recombinant
TrEMBLM0RQS40.0M0RQS4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-71basic pentacysteine1