PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P09640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 526aa    MW: 56034 Da    PI: 4.976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P09640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.4e-12341383754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  AveY+k+L
  GSMUA_Achr11P09640_001 341 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVEYLKEL 383
                             79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16338409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-14340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9340383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-13341387No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15341397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.15E-6456498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MMSRINSALW TEDGGDEGDA ALWSRANASS SKGGGMGASK EDELGLTSFK SLLEDDWYAA  60
LAASCPGQCA AATHPFEAFL AQQDLKDVAF LSNPSPHEAL LPPSVGNLDQ SQPFFPSKAA  120
LSSLLNAANP LDAGHGLGSD IPGFLPAAQA SNFPVVMNRK GDGPAAAMLG VVGIGTYGQL  180
GRPELHSGSQ LFGGRLPPPA ENCSSSSSDA AMFPLSFDNF ENSPFLNRAK ELRPLEMFPT  240
VGAPPTLFQK RTAAALQQNS AGENERKRKG NEEDDVDDDG IYGSGLNYDS GDASGENAKG  300
EENAKTEADG GGGNNSNADL MVTGGGMDKG KKKCFPAKNL MAERRRRKKL NDRLYMLRSV  360
VPKISKMDRA SILGDAVEYL KELLQRINDL QNELESTPSS SSLPTTTTTS LHTMIPTFSA  420
LPCHMKDELC PSSLQSPNSQ SARVEVRAKE GRAVNIHMFC ARRPGLLLSA MRALDGLGLD  480
IQQAVISCFN GFALDIFQAE QCKEPGVLPE DIKTVLLHSL GFQSTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330348KKKCFPAKNLMAERRRRKK
2342349ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383008.10.0PREDICTED: transcription factor ICE1-like
TrEMBLM0RQU40.0M0RQU4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P09640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-103bHLH family protein