PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P11660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 552aa    MW: 61442 Da    PI: 7.1308
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P11660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15109168155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_Achr11P11660_001 109 SVYRGVTRHRWTGRYEAHLWDnTCKrEGqkRKgRQVYLGGYDREEKAARAYDLAALKYWG 168
                             78*******************999975575337*************************98 PP
2AP234.64.7e-11234277955
                     AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSMUA_Achr11P11660_001 234 HHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 277
                             6779******988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.27E-22109177No hitNo description
PfamPF008476.5E-12109168IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17109177IPR016177DNA-binding domain
PROSITE profilePS5103219.414110176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-16110176IPR001471AP2/ERF domain
SMARTSM003801.4E-26110182IPR001471AP2/ERF domain
PRINTSPR003672.5E-5111122IPR001471AP2/ERF domain
PRINTSPR003672.5E-5158178IPR001471AP2/ERF domain
PROSITE profilePS5103217.701212285IPR001471AP2/ERF domain
SMARTSM003801.2E-25212291IPR001471AP2/ERF domain
PfamPF008473.7E-6234277IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15234286IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-15235286IPR001471AP2/ERF domain
PfamPF132253.3E-34437518IPR025114Domain of unknown function DUF4033
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEMLLRPCGF DLQASSDNDC AVAYNYQYFL PPPPAPASTE LKLEDLLGGD SGAHCSETLT  60
VDGQDTSSVS TVLIQDLRAV DDSSSAPSTG LENTLVPPPQ PPAAGHRTSV YRGVTRHRWT  120
GRYEAHLWDN TCKREGQKRK GRQVYLGGYD REEKAARAYD LAALKYWGPT ATTNFPVICY  180
SREIEEMKCM TKQEFIASIR RKSSGFSRGA SIYRGVTRQE IQFFENIIRF SLMHHQHGRW  240
QARIGRVAGN KDLYLGTFAT EEEAAEAYDV AAIKFRGANA VTNFELSRYD VEAIANTELP  300
IGASAKRIKQ SLQSDQDQLP LDKSDKGQHL NFIDMPRSEY KPGAFDALLL QFFRKKMVQE  360
VGWDSEKPGY VGLIEVANHL MIKGKSISET ERSAVRVLVS LFPPLLLDLF KMLIAPINGG  420
KVASMMLARA TAMLCQWLMG PCSVNSVDLA DGSSCSSGVF VERCKYLEES KCLGVCVNTC  480
KLPTQTFFRD YMGVPLYMEP NFSDYSCQFN FGVPPPPPAS DKALQEPCLA ICPNASRRRE  540
LSGREIEQCP KV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018676070.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
TrEMBLM0RRE60.0M0RRE6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P11660_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-102AINTEGUMENTA-like 5