PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P11830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 252aa    MW: 28299.4 Da    PI: 7.4645
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P11830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.2e-20176209134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C++Cgt +Tp+WR+gp+g+++LCnaCG++y++ +
  GSMUA_Achr11P11830_001 176 CRHCGTRETPQWRSGPNGSSELCNACGIRYKSGR 209
                             *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.2E-14170220IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-13172221No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15174207IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.59E-17175218No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003209.9E-18176209IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.701176206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVPTLAALFV MVYRPRLFNL DLDESLEPHM DDPADEPLYV PDDPLDSIRF LFDPLDESIV  60
ASWKPEVTEF SVAEAAEVLR PDCHTAVPGT LRRPRSQHQP RARRLDPMTS APGGVDGAQR  120
RSRSLDPWGT APADVGDARG RGRRRRRARS STRESLDAAD DPITRDENVG DGERICRHCG  180
TRETPQWRSG PNGSSELCNA CGIRYKSGRL FPEYRPSTTA TSIDSSNYSN RHSTIMTIRQ  240
RRENEGRGRE RG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138148RGRGRRRRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383570.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLM0RRG30.0M0RRG3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P11830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-22GATA transcription factor 4