PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P12530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 185aa MW: 21167.7 Da PI: 10.3117

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P12530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.9	7.3e-13	69	111	57	99
TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++yvltkGW++Fvk+++L++gD+v+F++ + + +l+++ +r+ GSMUA_Achr11P12530_001 69 QSYVLTKGWSRFVKEKKLDAGDVVLFERLRAGGDRLYIGCRRQ 111 78*************************9888888899999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.5E-9	38	68	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-17	40	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.50E-15	42	110	No hit	No description
SMART	SM01019	9.5E-5	44	111	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-10	68	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.896	68	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.7E-13	69	117	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDPVSDHHHE AWSWEPPVNL HQHYRHHPYR GEQIEPRRQR EHMFEKSLTP SDVGKLNRLV 60 IPKQQAENQS YVLTKGWSRF VKEKKLDAGD VVLFERLRAG GDRLYIGCRR QGREESPPAP 120 GAPPARPSRN HSCLGTFLRP GNRTKSLQFS TSRSCSGDRE EEAAKNTAEA PANSKRLRLF 180 GVNLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383457.1	3e-92	PREDICTED: B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	2e-27	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M0RRN3	1e-135	M0RRN3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P12530_001	1e-136	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	6e-27	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]