PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P12670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 198aa    MW: 21353.8 Da    PI: 6.2832
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P12670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06447542
                zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             C+ +e+  +   C  ++  lC +C ++ H        H++vpl
  GSMUA_Achr11P12670_001  4 QCDVCERAAAAVLCCADEAALCWSCDEKVHAAnklagkHQRVPL 47
                            7******99*********************66899999999986 PP
2zf-B_box31.53.7e-1058100238
                zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                             + ++C+ ++ek   +fC +++ llC++C + +H        H+
  GSMUA_Achr11P12670_001  58 QIPNCDICQEKAGYFFCLEDRALLCRQCDVVIHTAspyvssHQ 100
                             6799*****************************5556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000212.09E-7347No hitNo description
PfamPF006432.3E-5447IPR000315B-box-type zinc finger
SMARTSM003361.0E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.10157104IPR000315B-box-type zinc finger
SMARTSM003362.1E-1257104IPR000315B-box-type zinc finger
PfamPF006436.2E-858100IPR000315B-box-type zinc finger
CDDcd000217.75E-862104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKIQCDVCER AAAAVLCCAD EAALCWSCDE KVHAANKLAG KHQRVPLLPT NPNSCSSQIP  60
NCDICQEKAG YFFCLEDRAL LCRQCDVVIH TASPYVSSHQ RFLITGLQVA LQHHLTNGSN  120
KNSSSGGNGD SNSTRSDGPH RSQVTADSIV NQKLQAATSG YVTEEGLRPP WPWNEILGGF  180
QFDPCHGLSE PGSPDQTG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383444.11e-147PREDICTED: B-box zinc finger protein 22-like
RefseqXP_009383445.11e-147PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM26e-56BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM0RRP71e-146M0RRP7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P12670_0011e-147(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-41light-regulated zinc finger protein 1