PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P13410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 369aa MW: 39677.3 Da PI: 9.2497

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P13410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.6e-32	182	237	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSMUA_Achr11P13410_001 182 KARRCWSPELHQRFLHALKQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 237 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.01	179	239	IPR017930	Myb domain
SuperFamily	SSF46689	1.37E-17	180	239	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-28	180	240	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-26	182	237	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-8	184	235	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDFSATLPSC GDYVRALEEE RKKIQVFQRE LPLCLQIVTH AIDSARRQMN GHATMSEDGP 60 ILEEFIPLKP SSSSSEDRSV DGAAKKSGSA ATRADEKPDW LRSVQLWNQE ADAFGKVEPP 120 TKPIAVNARR IGGAFHPFER EKHVAAPIPA SSSTTSGKGG VGGSGVGGEE KEKEGQSQPH 180 RKARRCWSPE LHQRFLHALK QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR 240 PSTAVHSSSS NTTNPPIPQF VVVSGIWVPP PDYTVAAPPA DAPCTPAVGV FAPAASLPSD 300 SRVRPQQSKQ SDRSPTGPQL EKGGRSEESN SSGNAAAFNS LSPAASSSSQ TTTASHLEIT 360 CKSFMVGRQ

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDFSATLPSC GDYVRALEEE RKKIQVFQRE LPLCLQIVTH AIDSARRQMN GHATMSEDGP  60
ILEEFIPLKP SSSSSEDRSV DGAAKKSGSA ATRADEKPDW LRSVQLWNQE ADAFGKVEPP  120
TKPIAVNARR IGGAFHPFER EKHVAAPIPA SSSTTSGKGG VGGSGVGGEE KEKEGQSQPH  180
RKARRCWSPE LHQRFLHALK QLGGSHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR  240
PSTAVHSSSS NTTNPPIPQF VVVSGIWVPP PDYTVAAPPA DAPCTPAVGV FAPAASLPSD  300
SRVRPQQSKQ SDRSPTGPQL EKGGRSEESN SSGNAAAFNS LSPAASSSSQ TTTASHLEIT  360
CKSFMVGRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-14	182	235	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-14	182	235	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-14	182	235	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-14	182	235	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-14	182	240	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383634.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	3e-90	HHO3_ARATH; Transcription factor HHO3
TrEMBL	M0RRX1	0.0	M0RRX1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P13410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-80	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]