PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P13440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 199aa    MW: 21981.9 Da    PI: 6.8001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P13440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.4e-151662354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  GSMUA_Achr11P13440_001 16 KSHSEAERRRRERINTHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 62
                            79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8821362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-121662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-41665No hitNo description
Gene3DG3DSA:4.10.280.106.6E-151772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-151771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-131968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.5E-599171No hitNo description
CDDcd048732.56E-599167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTPQEIMDAK ALAASKSHSE AERRRRERIN THLARLRSLL PSTTKTDKAS LLAEVIQHVK  60
ELKRQTLEMA EDSPLPTETD ELTVDATNDE DGRFLVRASL CCDDRSDLLP DLIKALKVLK  120
LRTLKAEIAT LGGRIKHVLV ITGEDGADHQ QPEQSVASIQ DALRAVMERA SSTDEPTAAG  180
GIKRQRTTTL SSTLEHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383631.11e-138PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y13e-71BH030_ARATH; Transcription factor bHLH30
TrEMBLM0RRX41e-139M0RRX4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P13440_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]