PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P13680_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 107aa MW: 12193.2 Da PI: 9.2261

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P13680_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	13	34	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C+++F + L++H++ H GSMUA_Achr11P13680_001 13 CYYCDRVFDDEKILVQHQKAkH 34 99****************9877 PP
2	zf-C2H2	12.3	0.00051	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ + H H GSMUA_Achr11P13680_001 35 FKCHVCHKKLSTAGGMAIHVLQvH 58 89***********99999987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	11.674	6	65	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.28E-5	10	60	No hit	No description
SMART	SM00355	16	11	34	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.065	35	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MGKKKKRPSK VWCYYCDRVF DDEKILVQHQ KAKHFKCHVC HKKLSTAGGM AIHVLQVHKE 60 TVTKVPNAKP DRESTEIEIY GMQGIPPDIL AAHYGEGNIL SMLFLSD

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383758.1	8e-67	PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X2
Refseq	XP_018676160.1	1e-66	PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X1
Swissprot	Q9C5G0	2e-54	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	M0RRZ8	9e-75	M0RRZ8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P13680_001	2e-75	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6355	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	6e-57	C2H2 family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]