PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P14570_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 492aa MW: 54405.4 Da PI: 7.0478

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P14570_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29	2.4e-09	183	223	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR++Kka++++Le + k+Le+e GSMUA_Achr11P14570_001 183 AKTLRRLAQNREAARKSRLKKKAYVQQLESsrlRLKQLEQE 223 6889*************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-5	180	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.174	182	226	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-6	183	223	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-7	183	225	No hit	No description
SuperFamily	SSF57959	2.11E-6	184	227	No hit	No description
CDD	cd14708	1.61E-22	184	235	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.1E-29	266	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MATHRIGETG LSDSGPSTRS VSYGVHGTSL AASNFFDQEG AAYFGELEEA LMQGVDGIRE 60 IEDRKSFFGP RPATLEIFPS WPMRFQQTPR GKAHSARSTD SGSAQNTPSH PGSDSTSSRK 120 ETLMMMMTSG ASMTGTTPTL QPTSQDKISG NGNPSTLSIS LLFLLFLKMT DSTIEKHGKQ 180 LDAKTLRRLA QNREAARKSR LKKKAYVQQL ESSRLRLKQL EQELQRARSQ GLFLGVAGSS 240 NEAISPGAAM FDMEHARWLD ENCKLMSELR GALQAHLPEA SFTVIVDQCI MNYDELFQLK 300 AEVAKSDVFH LLSGSWTTPA ERSFLWMGGF RPSELLQILI PQLDPSTEQQ LIYNLKQSSQ 360 QAEEALSQGL EQLHQSLADT VAGGPLSDGV YVGNYMGHMV LALEKLAHLE GFVRQADNLR 420 QETLHQLRRI LTSRQAARCF VAIGEYYTRL RALSSLWASR PRQNLIGDDS VGSSTTDLQI 480 VHPSMQDHFS GF

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MATHRIGETG LSDSGPSTRS VSYGVHGTSL AASNFFDQEG AAYFGELEEA LMQGVDGIRE  60
IEDRKSFFGP RPATLEIFPS WPMRFQQTPR GKAHSARSTD SGSAQNTPSH PGSDSTSSRK  120
ETLMMMMTSG ASMTGTTPTL QPTSQDKISG NGNPSTLSIS LLFLLFLKMT DSTIEKHGKQ  180
LDAKTLRRLA QNREAARKSR LKKKAYVQQL ESSRLRLKQL EQELQRARSQ GLFLGVAGSS  240
NEAISPGAAM FDMEHARWLD ENCKLMSELR GALQAHLPEA SFTVIVDQCI MNYDELFQLK  300
AEVAKSDVFH LLSGSWTTPA ERSFLWMGGF RPSELLQILI PQLDPSTEQQ LIYNLKQSSQ  360
QAEEALSQGL EQLHQSLADT VAGGPLSDGV YVGNYMGHMV LALEKLAHLE GFVRQADNLR  420
QETLHQLRRI LTSRQAARCF VAIGEYYTRL RALSSLWASR PRQNLIGDDS VGSSTTDLQI  480
VHPSMQDHFS GF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383673.2	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	O49067	1e-169	LG2_MAIZE; Transcription factor LG2
TrEMBL	M0RS87	0.0	M0RS87_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P14570_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-131	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]