PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P15560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17787.5 Da    PI: 10.4522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P15560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.45.9e-261261251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rie+ + rqv fskRr g++KKA+EL vLCdaev +++fs+ gklye+ss
  GSMUA_Achr11P15560_001 12 RIEDRTSRQVRFSKRRSGLFKKAYELAVLCDAEVGLLVFSPAGKLYEFSS 61
                            8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-35362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.59363IPR002100Transcription factor, MADS-box
CDDcd002652.45E-36473No hitNo description
SuperFamilySSF554557.33E-27564IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-28525IPR002100Transcription factor, MADS-box
PfamPF003194.9E-261259IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-282540IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-284061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAPRRGKVEL RRIEDRTSRQ VRFSKRRSGL FKKAYELAVL CDAEVGLLVF SPAGKLYEFS  60
SVSSQCTSAS SHWVFLMRTT FDSHRGYFTS IINPASLRRS TSSEIAFCRS GANFLGLCFI  120
GLAPGSMLSW CWATSWSIPG ISLEDHTNTS VFLLRKSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-16563260Myocyte-specific enhancer factor 2A
3mu6_B3e-16563260Myocyte-specific enhancer factor 2A
3mu6_C3e-16563260Myocyte-specific enhancer factor 2A
3mu6_D3e-16563260Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0RSI61e-112M0RSI6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P15560_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.17e-25AGAMOUS-like 14