PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P15810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 199aa    MW: 22297.3 Da    PI: 8.7044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P15810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-195199355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+G+r+++ +g+W+AeIrdp +     r++lg+f taeeAa+a+++a+++++g
  GSMUA_Achr11P15810_001 51 YRGIRRRP-WGKWAAEIRDPAK---GVRVWLGTFTTAEEAARAYDRAARRIRG 99
                            9*******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.12E-2350108IPR016177DNA-binding domain
PROSITE profilePS5103224.67150107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3250108IPR001471AP2/ERF domain
SMARTSM003801.7E-3950113IPR001471AP2/ERF domain
CDDcd000183.03E-2051108No hitNo description
PfamPF008471.5E-125199IPR001471AP2/ERF domain
PRINTSPR003678.4E-125162IPR001471AP2/ERF domain
PRINTSPR003678.4E-127389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MCGGAIISDF TPPRNHIRRR RPDHLLSASD LWPESFQDKA APRKRERKNL YRGIRRRPWG  60
KWAAEIRDPA KGVRVWLGTF TTAEEAARAY DRAARRIRGR KARVNFPNEV EPKQVSVALV  120
EPKPEGDGDG EVRRLSEELM AYESSMNFFG IPYMEGGAAA TAPVATDEVV TGNIGIEACD  180
PPVSSGMEML WSFDDILPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2251110666ATERF1
3gcc_A2e-2251110666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14357KRERKNLYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880403e-57AK288040.1 Oryza sativa Japonica Group cDNA, clone: J075143P16, full insert sequence.
GenBankAP0043433e-57AP004343.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0618H09.
GenBankAP0062683e-57AP006268.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0037D09.
GenBankAP0149633e-57AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-57CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383897.11e-144PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222592e-45ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLM0RSL11e-143M0RSL1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P15810_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-34ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]