PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 260aa    MW: 28236 Da    PI: 7.5852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-063355223
                            EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                            +C+ Cg++F+ +++L+ H+ + H
  GSMUA_Achr11P16550_001 33 SCSECGEVFTKPETLELHQAVrH 55
                            7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5153260IPR007087Zinc finger, C2H2
PROSITE patternPS0002803255IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-2057256No hitNo description
Gene3DG3DSA:3.90.228.102.7E-1158256IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQLPKLAGCY ECHAVSIDPS SRRYPRPRTT LCSCSECGEV FTKPETLELH QAVRHAVSEL  60
GTEDSACNVV EIIFKSSWQK KDRPICKIER ILKVHNAPSA VAPFEDYRAA VKFRRRHHPS  120
RCAADGNELL RFHCTSLACA LGARGSTSLC SGSSSSAPCS VCTIIRHGFG GAHHPRGVRT  180
TASSGRAHDA SGGGERRAML VCRVIAGRVR RPCDEEEDED EDAYDSVAVG DSGGNLEELL  240
VANPTAILPC FVVIYRALLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383982.10.0PREDICTED: uncharacterized protein LOC103971641
RefseqXP_009383983.10.0PREDICTED: uncharacterized protein LOC103971641
TrEMBLM0RST50.0M0RST5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-77C2H2-like zinc finger protein