PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 1410aa    MW: 153805 Da    PI: 4.7907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-0811181167154
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH    1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54  
                              r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  GSMUA_Achr11P16630_001 1118 RKVQKADREKLRRDRLNEQFLELGNALDPD----RPKNDKATILGDTIQMLKDL 1167
                              5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3003.3E-61522732IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.05E-17541689IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5172047.517542766IPR006703AIG1-type guanine nucleotide-binding (G) domain
PfamPF045481.9E-29545679IPR006703AIG1-type guanine nucleotide-binding (G) domain
PfamPF118861.1E-1228161079IPR024283Translocase of chloroplast 159/132, membrane anchor domain
SuperFamilySSF474592.09E-1211171186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.98911171167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1111171190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-611181167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-711181171No hitNo description
SMARTSM003535.3E-711231173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1410 aa     Download sequence    Send to blast
MENGAGAAKD ECRPGQMGLE MAAENGDSQR ELAGGADGGP PKSEDGSKDL GENEVFEEAM  60
EAPQHLVHDS HVGMVIEPEG VVEPADLRVG EKNLEVEMVG SEGYIDSTDA AGHDQRPDEQ  120
EMVGLVKLDG APGVEGNGQE DSVSFDKLDA STGSQHTDQS SEEQVAVESE EGMPACDESD  180
GELGKGEDEK EFMLGKLNSV VPDSKDGKGM DEVTNGSSEI VNDREISVGD GNTELVGKKS  240
EIEEPEMVRL DGLADLLDEG SENGQSLEVT SDECGADNDA ESHQVSTQQM KDISAQSLAV  300
SEEPSKVPQL KDNSAEDNYG FATNGHAAVQ KEGGSFATNG HATMEKQDGS SCSHVTSAAN  360
DSYVKDDKAV MHETTKKLQK ESVENLGHLS STSSDNKRSS SPSALPSTLN HENSGGPGLS  420
SRPAGLGSSA PLLEPSVRSL QQPRTNGSAP RRVSQPSEEP PNDDGEENDE TREKLQMIRV  480
KFLRLAHRLG QTPHNVVVAQ VLYRLGLAEQ LKRNTNRPGV FSFDRASVVA EQLEAAGQET  540
LDFSCTIMVI GKTGVGKSAT INSIFDEVKL PTDAFQVGTK KVQEVVGMVQ GIKVRVIDTP  600
GLFSSSLDQN RNEKTLHSVK RFINKTPPDI VLYFDRLDMQ SRDYGDAPLL RTITDIFGAS  660
IWFNAIVVLT HAASAPPDGP NGSPLTYEMF VTQRSHVVQQ AIRQAAGDVR LMNPVSLVEN  720
HSACRMNRAG QRANMLLKLQ DGPPGRTFGS RPRVPPLPFL LSSLLQSRPP PKLPEEQLGD  780
DDNLDEDLGE ISDSDEGSDY DELPPFKPLT NGPASVPVPM PDFVLPNSFD SDNPTHRYRF  840
LDSSSQWLVR PVLDSQGWDH DIGYEGLNVE RVFVIKDKMP LSVSGQLTKD KKECSLQMEV  900
ASSIKHSESK STSLCLDMQT VGKDVAYTLR GDTRFKNFRR NNTAAGVSVT VLGDSLSAGL  960
KFEDKLMISQ RLRVLMSGGA MTGRGDVAYG GRLEATLRDK DYPIRQALST LQLSIMDWHG  1020
DLTLGCNVQS QLPLDRGTNL IGHANLSNKG TGQIGIRLNS SEHFQIVLLA LFPIIRNVQK  1080
ILFNHTFPLL SPFILLTRNI FVFLSNSHRV DKDSVAARKV QKADREKLRR DRLNEQFLEL  1140
GNALDPDRPK NDKATILGDT IQMLKDLTAQ VNRLKSEYNS LSEESRELTQ EKNELRDEKA  1200
KLKSEIDDLN VQYQQRLRVF YPWATMDPSL VIGRPPYPFP MPVPIPSAAI PIHPVHSYPF  1260
FHGPIPGTIS NPCSTYMPNS PSNPQVEQSS NQHINQNMHI KDSRSQTSSH QDSKSKPSDQ  1320
HQRNSGQRSD DFSDVATELE LKTPGSAVHS QSTSAHDEDL SSEMRKGKQL PQHKGSGAST  1380
CSSSSRCSSS CSVPDDNSND VRDGSGPEKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bb1_A1e-2654473339224Translocase of chloroplast 34
3bb1_B1e-2654473339224Translocase of chloroplast 34
3bb1_C1e-2654473339224Translocase of chloroplast 34
3bb1_D1e-2654473339224Translocase of chloroplast 34
3bb1_E1e-2654473339224Translocase of chloroplast 34
3bb1_F1e-2654473339224Translocase of chloroplast 34
3bb1_G1e-2654473339224Translocase of chloroplast 34
3bb1_H1e-2654473339224Translocase of chloroplast 34
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383994.10.0PREDICTED: translocase of chloroplast 120, chloroplastic-like
TrEMBLM0RSU30.0M0RSU3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16630_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-65bHLH family protein