PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 292aa    MW: 31407.7 Da    PI: 5.3617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06164206855
                             HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             + r RR+ri ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  GSMUA_Achr11P16900_001 164 AARARRKRISEKTQELGRLIPGgN------KMNTAEMFQAAYKYVKFLQ 206
                             6799*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.649156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-7159209No hitNo description
SuperFamilySSF474591.31E-10160212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-9160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALSLHQSWE AAGHPHPGVG LLHDSQSEVA DALLGFFSDP PDAAHLPIDY LLDPPGDCFL  60
HDDAMANPLP CFSAPSAVSL PPGLHAPGDD FDLLHRPKRP RSCSDLYRPS DLTFEASSCN  120
VASWPAPELM AELLVAAPPP ARGIPACDGD RKLGAGCLSA QTVAARARRK RISEKTQELG  180
RLIPGGNKMN TAEMFQAAYK YVKFLQAQVG ILGLMGSIKG WKAPQEVEQK LQALLASTAV  240
QEKLSGEGRC IVPEAVIGAI SADRDIESNM PVSRDLDRFI ESSRQLNRDS EN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385174.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLM0RSX00.0M0RSX0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-33bHLH family protein