PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 222aa    MW: 23937.8 Da    PI: 4.9206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-19138172135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C++ +Tp+WR gp+g+ktLCnaCG+++++ +l
  GSMUA_Achr11P17140_001 138 CRHCQAEETPQWRAGPEGPKTLCNACGVRFKSGRL 172
                             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-17132182IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.622132168IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14135195No hitNo description
Gene3DG3DSA:3.30.50.108.9E-15136170IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.94E-14137194No hitNo description
PfamPF003203.3E-17138172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440138163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MALSEKAMTE PLEEETAAEA CFADELLFMD FTSDPYHPPL EAASSAAATA AAGELHLHAL  60
LFQELFDPSG DGLPGLPTEG GDGGDEEEEE LEWLANKDAF PALETSFEIP APSRSGGGGG  120
SGIKAGAAMV CTLERRRCRH CQAEETPQWR AGPEGPKTLC NACGVRFKSG RLVPEYRPAS  180
SPTFSAAIHS NSHRRIVEMR RQKAVCERRS TTAPRRPSLL LR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384051.11e-114PREDICTED: GATA transcription factor 1-like
TrEMBLM0RSZ41e-159M0RSZ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17140_0011e-160(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-37GATA transcription factor 1