PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P17520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 220aa MW: 24040.7 Da PI: 7.809

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P17520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	224.8	2.3e-69	18	181	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvek 88 seq+Cyv+Cn C+t+lavsvP+tslfk+vtvrCGhCt+llsvn++ + a + hl + + ll+el+ + +l + GSMUA_Achr11P17520_001 18 PSEQLCYVHCNLCDTVLAVSVPFTSLFKTVTVRCGHCTNLLSVNMRGLHLPPANQIHLTHPCLIPshtsLLDELQCQPPSLLLDPSI 104 69*****************************************999999899999999877663444555555555555444433 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ + ee+pr+p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl GSMUA_Achr11P17520_001 105 LNCN----TMAP-VKGVGEELPRTPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 181 3332....2222.4567899**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-69	18	181	IPR006780	YABBY protein
SuperFamily	SSF47095	9.56E-8	124	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-4	130	173	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSSSSAAFSL DHLSPPPPSE QLCYVHCNLC DTVLAVSVPF TSLFKTVTVR CGHCTNLLSV 60 NMRGLHLPPA NQIHLTHPCL IPSHTSLLDE LQCQPPSLLL DPSILNCNTM APVKGVGEEL 120 PRTPVVNRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN WAHFPHIHFG 180 LMPDQGLKKA SVRQPEGEDV LPKDGFYATA AAANMGVAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384089.1	1e-157	PREDICTED: protein YABBY 4-like
Swissprot	A2X7Q3	4e-83	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	4e-83	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	M0RT32	1e-162	M0RT32_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P17520_001	1e-163	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-81	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]