PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 471aa    MW: 52995.5 Da    PI: 4.7282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09270315454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h   Err  +++N++f  L++l+P+      +K++Ka+iL  ++eY+k++
  GSMUA_Achr11P17560_001 270 NHVLSERRSGEKLNEKFLVLQSLIPSV-----TKVDKASILGDTIEYLKDM 315
                             6888899999****************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-5616199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.519266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-10269320No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14269327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14269328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAVDPEMHDE LPEKPLRRQL AATVRTIQWS YAIFWSTSTR QPGVLSWSDG YYNGDIKTRK  60
TTQSVELKAD QMGLQRSEQL RELYESLSAG DSNQQMRRPC ASLSPEDLTH TEWYYLVCMS  120
FTFTPGQGLP GKAFANNQHE WLSNAQFADS RIFSRSLLAK SASIQTVACI PFMGGVLELG  180
TTESILEDAA VVTQITSFFW ELPFPVRSEQ SMSSPQMADD DDDDDDDDVD DAEEVHTDHL  240
CDYDELISLN SNEYASMSVV PWRPGESGSN HVLSERRSGE KLNEKFLVLQ SLIPSVTKVD  300
KASILGDTIE YLKDMERRVQ ELESCRESSL ELDAKNRRKH PDVAERTSDN YGSKEMMANG  360
RKSCSNKRKT CDAGETEAEH HWVLSRDGPI DVIVTMKEAE VVVEIHCPWR ECLLLEIVES  420
ISHFHLDPLS VQSSTVDGVL ALTVKSKFRS AIVASPGMIK RSLHRVIGKC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-18101993192Transcription factor MYC3
4rqw_B2e-18101993192Transcription factor MYC3
4rs9_A2e-18101993192Transcription factor MYC3
4yz6_A2e-18101993192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681660.10.0PREDICTED: transcription factor GLABRA 3-like
TrEMBLM0RT360.0M0RT36_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.38e-80bHLH family protein