PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P17950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 392aa    MW: 42824.7 Da    PI: 5.3369
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P17950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.7e-29193250359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  GSMUA_Achr11P17950_001 193 DLWAWRKYGQKPIKGSPHPRGYYRCSSSkGCSARKQVERSRTDPDMLVITYTYEHNHP 250
                             99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.202186252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-30190252IPR003657WRKY domain
SuperFamilySSF1182903.27E-25191252IPR003657WRKY domain
SMARTSM007745.7E-36191251IPR003657WRKY domain
PfamPF031064.9E-25193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MENDQGELAD VVRAGGWVGA SSTAFPASDW QLPSEPVVFP PASIKDSSSD LGDPFMKLCD  60
PLIDELSGIE FFKSRETMAG QVNMVIKESD CGDGGGFISQ KLLMGGGIKK PFDITSPEAD  120
KSSPLSPVMA GEMMKVSSGA VGCLGDDGGG GQQISSSLEQ GVKRRKNEAK KVVCIPAPAA  180
ACGRPGGEAV PCDLWAWRKY GQKPIKGSPH PRGYYRCSSS KGCSARKQVE RSRTDPDMLV  240
ITYTYEHNHP WPTQRNALAG FARSQTSKNC STRNLKEEPK DTTRCSAASV KQEVKEVVDK  300
VNDQAFYRSR EPLISEQYHP DNFFTDMSVL EADTVNLIFS KELTETKPEE NGDKALDPFN  360
ICFQTIVQSL NVLFLFCFLL CVCMTVCVCV YM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-23166253280Disease resistance protein RRS1
5w3x_D1e-23166253280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385188.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLM0RT750.0M0RT75_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P17950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-54WRKY DNA-binding protein 35