PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P18950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 224aa    MW: 25090.5 Da    PI: 9.7262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P18950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-066988120
                            EEETTTTEEESSHHHHHHHH CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                            + C+ C+k+F+r  nL+ H+
  GSMUA_Achr11P18950_001 69 FACSVCNKTFNRYNNLQMHM 88
                            78*****************9 PP
2zf-C2H213.50.00021153175123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C +C+k+F  + + ++H +++
  GSMUA_Achr11P18950_001 153 FACRKCSKPFAVRGDWRTHEKNC 175
                             78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.35E-76891No hitNo description
Gene3DG3DSA:3.30.160.603.4E-66988IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0326996IPR007087Zinc finger, C2H2
SMARTSM003550.0556991IPR015880Zinc finger, C2H2-like
PfamPF128741.0E-46988No hitNo description
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576678.35E-7148173No hitNo description
SMARTSM00355110153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGLRDCPVDE SSFGFCFQSP PLCQWLKTPP SSSSSSASSS SSSSSSSSSS ESRYWIPTAA  60
QILIGLEKFA CSVCNKTFNR YNNLQMHMWG HGPEYRKGPE SLKGAQPMAM LKLPCYCCAR  120
GCKNSIDHPR AKPLKDFRTL QTHYKRKHGI KSFACRKCSK PFAVRGDWRT HEKNCGKLWL  180
CSCGSDFKHK RSLNDHVRSF GNGHAACFTS RDASREADRV RSVE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384245.11e-128PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SVY18e-94ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0RTH51e-165M0RTH5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P18950_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.16e-94C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]