PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P19580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 415aa    MW: 46400.8 Da    PI: 9.423
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P19580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.1e-4190166278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             C v+gC+adls+++eyhrrhkvCe+hsk+pvv+v g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  GSMUA_Achr11P19580_001  90 CLVDGCKADLSKCREYHRRHKVCEAHSKTPVVTVGGREQRFCQQCSRFHMLVEFDEAKRSCRKRLEGHNRRRRKPQP 166
                             **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.8E-3483151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.13787164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3989169IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3090163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDWDLKMPPW CLAELDRDGS IINGTAGGPA VHRLASGPEC SVDLKLGGLS DSGSSYKWKD  60
QLRVSSMSVP SSGPLKKQRA MSNASQKASC LVDGCKADLS KCREYHRRHK VCEAHSKTPV  120
VTVGGREQRF CQQCSRFHML VEFDEAKRSC RKRLEGHNRR RRKPQPSSLN SGIRFSAYPQ  180
VHTTVTTEPN WTRIVRREED TTVPVLIDRK TSNANSSHSY SEERKQFPFL QESETSLSNI  240
TPLITSRLSG ISSSEMLSDG LTQVFHSDRA HSLLSSPTTQ TSLINPCHMM RSADGIVMGQ  300
PLVSSMQYSD LTQYSRVATE GVSLTGYSCS GVGGDDRART IMVSEANGVG IHRQKVFCRR  360
GEGSTALPFS WQLLLSTCLV NPKIIRVIYW KIFQFIIFIA VFLFYFTSSY QFWSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27901631184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146163KRSCRKRLEGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675833.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
TrEMBLM0RTN80.0M0RTN8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P19580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-44SBP family protein