PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P19710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 466aa    MW: 50259.5 Da    PI: 7.6523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P19710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33143200260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+ers  d++++ei+Y+g+Hnh+k
  GSMUA_Achr11P19710_001 143 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKIERSL-DGQITEIVYKGTHNHPK 200
                             8****************************************.***************85 PP
2WRKY75.18.7e-24291356159
                             ---SS-EEEEEEE-.......-TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKe.......vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+         +s + rsYY+Ct+ gC+v+k+ver+ +d ++v++tYeg+Hnh+
  GSMUA_Achr11P19710_001 291 LDDGYRWRKYGQKVyayischLLSSSNCRSYYKCTTVGCSVRKHVERACHDLRAVITTYEGKHNHD 356
                             59***********633322225699****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27137201IPR003657WRKY domain
SuperFamilySSF1182904.84E-25141201IPR003657WRKY domain
SMARTSM007743.3E-35142200IPR003657WRKY domain
PfamPF031063.5E-25143199IPR003657WRKY domain
PROSITE profilePS5081123.548143201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-29276358IPR003657WRKY domain
SuperFamilySSF1182909.55E-22283358IPR003657WRKY domain
PROSITE profilePS5081128.816286358IPR003657WRKY domain
SMARTSM007742.2E-24291357IPR003657WRKY domain
PfamPF031062.3E-17292356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MASSAASSWH ADAFAFSTGS FTELLSGAAA DAREFSDGVA GDGTDLPKFK FIAPPSLPIS  60
PSSSYFAIPA GFSPAALLDS PVLLSSGCLG EFSFQNGTKQ ASCFHPSSAS IPSVPIAPSC  120
SSSFPIGCTH HAQAVQTLQR RSDDGYNWRK YGQKQVKGSE NPRSYYKCTY PSCPTKKKIE  180
RSLDGQITEI VYKGTHNHPK PRSTTRNLAC AQATRSLMLE SVATPDNSSV SFGDDDLDLG  240
SQVSKSGVDE FEEEEPDAKR WKGKQEGEGA GSRTVREPRV VVQTTSDIDI LDDGYRWRKY  300
GQKVYAYISC HLLSSSNCRS YYKCTTVGCS VRKHVERACH DLRAVITTYE GKHNHDVPAA  360
RGSGGQGSSS FAMAIRPTAT TSSHQNQMLI TNSIFSGKSD GSANPSPFNP QNPRNYEFSS  420
GYDSSISTSY TDPQQRGQIQ SVFCKAAVKG EGDEIFYIPS PTSASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-29143359878Probable WRKY transcription factor 4
2lex_A7e-29143359878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384317.10.0PREDICTED: probable WRKY transcription factor 26
TrEMBLM0RTQ10.0M0RTQ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P19710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-93WRKY DNA-binding protein 33