PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P19880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 827aa    MW: 91185.7 Da    PI: 6.4721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P19880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20660709255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +grW+AeIrdp     +  kr++lg+f+taeeAa  ++ a+++l+g
  GSMUA_Achr11P19880_001 660 RFRGVRRRP-WGRWAAEIRDP-----HqrKRVWLGTFDTAEEAATVYDMAALRLRG 709
                             69*******.**********7.....235*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082634.4E-72864IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520581.6E-2739197IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.0E-3139181IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514506.44991112IPR001611Leucine-rich repeat
PROSITE profilePS514505.71113136IPR001611Leucine-rich repeat
PROSITE profilePS514504.986137158IPR001611Leucine-rich repeat
PfamPF005600.075159181IPR001611Leucine-rich repeat
PROSITE profilePS514507.219159180IPR001611Leucine-rich repeat
SMARTSM002201.8E-20284553IPR000719Protein kinase domain
PROSITE profilePS5001133.785284561IPR000719Protein kinase domain
PfamPF000695.8E-41287551IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.201.9E-14287360No hitNo description
SuperFamilySSF561126.7E-62288553IPR011009Protein kinase-like domain
PROSITE patternPS001070290321IPR017441Protein kinase, ATP binding site
CDDcd140667.20E-91290556No hitNo description
Gene3DG3DSA:1.10.510.108.6E-40363588No hitNo description
PROSITE patternPS001080407419IPR008271Serine/threonine-protein kinase, active site
SMARTSM003805.3E-38660723IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-30660718IPR001471AP2/ERF domain
PROSITE profilePS5103225.04660717IPR001471AP2/ERF domain
PfamPF008473.2E-13660709IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22660718IPR016177DNA-binding domain
PRINTSPR003671.3E-9661672IPR001471AP2/ERF domain
CDDcd000184.37E-26668717No hitNo description
PRINTSPR003671.3E-9683699IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MDRSVVFILF PLIFLLLDLS SFATADLSSD EQALLAFAMS VPHGRKLNWT SQSPICSSWV  60
GVTCTPDKTL LSLRSNRLIV GLPSDVASIP ALHSLYLQHN NLSGIIPSTL SSNLTFLDLS  120
YNSFTGELPL TIRNLTRLNA LFLENNSLSG PIPDFQLPKL RRLNLSYNNL SGPIPLSLQK  180
FAVESFLGNP FLCGTPLAQC FEIPPSSPPS PSEHPTKPKR SFWKKLSTGV IIAIAAELKG  240
KDALGARREK PKEEYSSSIQ EAEKNKLVFF EGCSYNFDLE DLLRASAEVL GKGNHGTTYK  300
AVLEDGTTVV VKRLKEVIIG KKEFEQQMEM IGRIRPHPNV VPLRAYYYSK DEKLLIYDYV  360
TSGNFSSLLH GSKGAGKTPL DWESRVKISL GAARGVAHIH AEGGGKFIHG DIKSNNVLLT  420
QELDACVADY GLAPFMSSAT TSSRIVVGYR APEVIETRKY TQKSDVYSFG VLLLEMLTGK  480
APLQSPGRDD VVDLPRWVQS VVREEWTAEV FDVELMRHQH IEEEMVQMLQ IAMACVAKSP  540
DQRPKMEELI RMIEDIRHSD SENRPSSEKS KDEKQSNATS PCDRNPSSSS PSPRVVRVYF  600
DDVDATDSSS NEEGRGVRRR VKRHVQEIGI EVAAAPRRMA LAAPKKEEAV VGGGERGKRR  660
FRGVRRRPWG RWAAEIRDPH QRKRVWLGTF DTAEEAATVY DMAALRLRGP KAVTNFPTPA  720
KDGDIAPVEA GGADGSRSSP TSVLCCDDVF AVGKEDDDGA PIEAGGIAGS RSSPTSVLGY  780
CDDPVPFGVD AFGLGVEASP LPLAEFYWPR QRLLEMEFGD LDIDDFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A3e-572475541315BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D3e-572475541315BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G3e-572475541315BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H3e-572475541315BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384331.10.0PREDICTED: probable inactive receptor kinase At5g58300
RefseqXP_009384332.10.0PREDICTED: probable inactive receptor kinase At5g58300
RefseqXP_009384333.10.0PREDICTED: probable inactive receptor kinase At5g58300
RefseqXP_009384334.10.0PREDICTED: probable inactive receptor kinase At5g58300
RefseqXP_009384335.10.0PREDICTED: probable inactive receptor kinase At5g58300
RefseqXP_018676563.10.0PREDICTED: probable inactive receptor kinase At5g58300
SwissprotQ9LVM00.0Y5830_ARATH; Probable inactive receptor kinase At5g58300
TrEMBLM0RTR80.0M0RTR8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P19880_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-17cytokinin response factor 4
Publications ? help Back to Top
  1. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX
    Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
    Mol. Cell Proteomics, 2007. 6(10): p. 1711-26
    [PMID:17586839]
  4. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  5. ten Hove CA, et al.
    Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set.
    Plant Mol. Biol., 2011. 76(1-2): p. 69-83
    [PMID:21431781]