PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P21040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 230aa    MW: 24865.8 Da    PI: 7.5048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P21040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023426123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C ++Fs+   L  H+r+H
  GSMUA_Achr11P21040_001  4 HRCSICFRRFSSGRALGGHMRRH 26
                            79********************9 PP
2zf-C2H212.40.00047111133123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ C+k+F++   L  H+ +H
  GSMUA_Achr11P21040_001 111 HQCGTCKKVFRSYQALGGHLASH 133
                             79*************99999988 PP
3zf-C2H210.80.0016162184123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp C ++F++   L  H r+H
  GSMUA_Achr11P21040_001 162 HECPFCFRVFPSGQALGGHKRSH 184
                             79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-8326No hitNo description
PfamPF139126.9E-8426IPR007087Zinc finger, C2H2
SMARTSM003550.042426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.74E-8106133No hitNo description
PfamPF139124.5E-11111135IPR007087Zinc finger, C2H2
SMARTSM003550.13111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576676.94E-5158187No hitNo description
PfamPF139126.2E-11161185IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871162189IPR007087Zinc finger, C2H2
SMARTSM003550.15162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEKHRCSICF RRFSSGRALG GHMRRHITKE AAYGLRENPR KSFRLVDPEF SSSFAAIEPA  60
GSSSVVVQDG ESETESLSDV TTEEDVALCL MMLSRDSWTA GKGSLLGRSK HQCGTCKKVF  120
RSYQALGGHL ASHRRPTACI PAVRSRTDGD DDSQASVDAK VHECPFCFRV FPSGQALGGH  180
KRSHLTSSTA TTTSGDAIGL IDLNLPAPLD DDAALSAVSD FEFSPNRTVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385229.11e-137PREDICTED: zinc finger protein ZAT9-like
TrEMBLM0RU341e-168M0RU34_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P21040_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-42C2H2-like zinc finger protein