PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P21080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 692aa    MW: 75302.4 Da    PI: 5.6236
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P21080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.42.8e-933276911374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl 83 
                             lv+lL+e+A++v++ ++  a+ +Larl+++  sp g+p+ R a+yf+eAL+  l++ ++ l ++ + s+ + ++    +++l+a+k+
  GSMUA_Achr11P21080_001 327 LVDLLFEAARMVEAMNFVGAHGILARLNHQlPSPVGKPLIRSAFYFKEALQLFLSNRSNPLHRQSQFSSHPLTTqwdIVQKLSAYKA 413
                             6899************************998*************************8887776665554443334569********* PP

                    GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166
                             fsevsPi++fs++t+ qa+le+++g++r+HiiDfdi+ G+QW +++q+La+R+    ++   l+iT+++s  s++  el+ ++e+L+
  GSMUA_Achr11P21080_001 414 FSEVSPIIQFSNFTCIQALLEELSGSDRIHIIDFDIGFGGQWSSFMQELAQRRssvaGSVWLLKITVLASGYSQNDLELQLIRENLS 500
                             **************************************************999666444559********9999************* PP

                    GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                             +fA+ l++pfefnv   + l+++++++L    gEa+aVnl ++  +l        s    +L lvk+lsPk+vv v+q ++ ++ +F
  GSMUA_Achr11P21080_001 501 HFASDLNIPFEFNV---HCLDSFDPSKLLGMGGEAVAVNLPVASANLS-------S--MVLLCLVKQLSPKIVVSVDQGCEPSGLPF 575
                             *************9...699**********************999996.......3..468************************** PP

                    GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                             l+ fl+a++  ++l++s++a+ +++++  +k+Er+ll+++i++ +  +++       ++ +W + + + GF p+++s+++++qa++l
  GSMUA_Achr11P21080_001 576 LQYFLHAFQSSMVLMESIDAS-GTDQDMISKIERFLLQPRIESSILRRHRV----DDKMVSWLAHFATTGFVPIRFSNFTETQAECL 657
                             ********************9.8999999*****************99987....78899*************************** PP

                    GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             l++v+ +g++ve++++sl+l+W++++LvsvSaWr
  GSMUA_Achr11P21080_001 658 LKRVSIKGFHVEKRQASLFLCWQHNELVSVSAWR 691
                             *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.664301671IPR005202Transcription factor GRAS
PfamPF035149.5E-91327691IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MRGLPYHGQG KGVLEAAETI LEGKQALFWV NKSPKLAIPE VAEPGSVLDH RSPSSPTSTV  60
TLSSSLGSSG SSNTAGVAVV SENPANKWPF SDSGSGAFGT EDWEAELQLI PAQLDTGFVA  120
GGERCGLGVE DWEAMLTETS AASPDREQTS LRWIIGDVVD HSAAGLKQQQ QQVLFSQGLV  180
DFNGSNDGLG FGILDPGIGL ESFGRIVDEL SVSASIGSLP PLASNVITGG SFLLESSNSW  240
VSPPSESAGV KGATFGHQTG SYLTDTMEDK PQLSGAGLLL TQPLATPSPS FFLSAGEVEH  300
QQLPHLLVPT QPKRLHSIHH HQLQHALVDL LFEAARMVEA MNFVGAHGIL ARLNHQLPSP  360
VGKPLIRSAF YFKEALQLFL SNRSNPLHRQ SQFSSHPLTT QWDIVQKLSA YKAFSEVSPI  420
IQFSNFTCIQ ALLEELSGSD RIHIIDFDIG FGGQWSSFMQ ELAQRRSSVA GSVWLLKITV  480
LASGYSQNDL ELQLIRENLS HFASDLNIPF EFNVHCLDSF DPSKLLGMGG EAVAVNLPVA  540
SANLSSMVLL CLVKQLSPKI VVSVDQGCEP SGLPFLQYFL HAFQSSMVLM ESIDASGTDQ  600
DMISKIERFL LQPRIESSIL RRHRVDDKMV SWLAHFATTG FVPIRFSNFT ETQAECLLKR  660
VSIKGFHVEK RQASLFLCWQ HNELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2733369025378Protein SCARECROW
5b3h_A2e-2733369024377Protein SCARECROW
5b3h_D2e-2733369024377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686265.10.0PREDICTED: scarecrow-like protein 27
RefseqXP_018686266.10.0PREDICTED: scarecrow-like protein 27
RefseqXP_018686267.10.0PREDICTED: scarecrow-like protein 27
RefseqXP_018686268.10.0PREDICTED: scarecrow-like protein 27
TrEMBLM0RU380.0M0RU38_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P21080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-95GRAS family protein