PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P21270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 552aa    MW: 62563.4 Da    PI: 8.1731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P21270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14365413255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r++h   Er+RR+++N++f  Lr+l+P+       K++Ka++L  ++eY+k+L+
  GSMUA_Achr11P21270_001 365 RASHVLSERKRREKLNEKFLVLRSLIPSV-----SKVDKASVLDDTIEYLKDLE 413
                             99**************************6.....5****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5216199IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-19362429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.708363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-19365428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-15365417No hitNo description
PfamPF000107.8E-12365413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MVADLNIHEE LPERKLSKQL AVTVRKIQWS YAFFWSTSTR QPGVLEWSEG HYNGEIKTRK  60
TTQSTEPDID QVGLQRSKQL RELYESLLSG ECNRQIRRPS ASLSPEDLTE AEWYYMLCMS  120
FTFSTGQGLP GKALANNQHI WLNTYQFSDS KEFARSLLAK AASVQTVVCI PIKGGVLELG  180
TTEFILEDPA LIKQIKSFFH QLPNPVCSEQ PTSTPQVAEN DEDMLCPVLD NDTDNSMFLE  240
NQKQINICQT HLYASAEQSD SVQCKVGKHV GSSHGVSQTQ NWQFIVVSST VGERTRNQML  300
MVSHGSSFIT WRKSMNTPKP CVRAPQELLK KILMDRAWLG GGHRLKRRVK NGLPEKFWRP  360
EGGARASHVL SERKRREKLN EKFLVLRSLI PSVSKVDKAS VLDDTIEYLK DLERRVQELE  420
SCRGSVERRK HFAVAERTSG NEEIMNGKRK ACDVDEAETQ HNWAVSKDGP IHVTITMKEK  480
EVSIEMRCPW REHLLLEIIG SMSDLRLDPL SVQSSTVDGM LALTLESKMR STAAASPTMI  540
ERSLQRVIAK CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-17102003193Transcription factor MYC3
4rqw_B9e-17102003193Transcription factor MYC3
4rs9_A9e-17102003193Transcription factor MYC3
4yz6_A9e-17102003193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ERKRRE
2372377RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385233.20.0PREDICTED: transcription factor EGL1-like
TrEMBLM0RU570.0M0RU57_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P21270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-131bHLH family protein