PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P21590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 205aa    MW: 21693.8 Da    PI: 9.8357
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P21590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC83.61.6e-2690134145
                     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                             ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+
  GSMUA_Achr11P21590_001  90 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 134
                             69****************************************997 PP
2QLQ62.11.5e-212560237
                     QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             FT +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k
  GSMUA_Achr11P21590_001 25 VFTFMQLQELEHQALIYKYMAAGLPVPVHLVLPIWK 60
                            5**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-82460IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.392560IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-152659IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.49990134IPR014977WRC domain
PfamPF088797.1E-2391133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAASSSLMLG LGLGLGRGPG AAKPVFTFMQ LQELEHQALI YKYMAAGLPV PVHLVLPIWK  60
SVAASSFGAY VYPSLTGYGS LCLDYRNSME PEPGRCRRTD GKKWRCSRDV VPDQKYCERH  120
MHRGRNRSRK PVEAGAAGGG DTTSTVVPTP QHHSNSSSTQ LSILIPPNGR QLLPTTAGGG  180
GGGGPVSQPE LGILHNGTAC KTATP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675903.11e-150PREDICTED: growth-regulating factor 10-like
SwissprotQ6AWX71e-62GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLM0RU891e-148M0RU89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P21590_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-39growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]