PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P21920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 198aa    MW: 21097 Da    PI: 9.3625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P21920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0015981123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C+k+F++   L  H  +H
  GSMUA_Achr11P21920_001 59 YECKTCNKCFPSFQALGGHRTSH 81
                            99**********99998888777 PP
2zf-C2H214.40.00011107129123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++Cg  Fs+   L  H+r+H
  GSMUA_Achr11P21920_001 107 HECSICGSEFSSGQALGGHMRRH 129
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-1058129No hitNo description
PfamPF139121.6E-115883IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3465986IPR007087Zinc finger, C2H2
SMARTSM003550.115981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4105129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.764107129IPR007087Zinc finger, C2H2
SMARTSM003550.02107129IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11107130IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MANCLILLAQ GRALEARPPP DQARKDDAAG RGGGAEKFTS RRFAEAATTT NGKAGFYVYE  60
CKTCNKCFPS FQALGGHRTS HKKPKLAPPP TTAAEEKVVS NTKPKIHECS ICGSEFSSGQ  120
ALGGHMRRHR PLAAADAQEA KKDKSFLSLD LNLPAPADEE LHRPPSPSFT LASKRPLIFP  180
APVSASASAS ALVVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384553.11e-133PREDICTED: zinc finger protein ZAT5-like
TrEMBLM0RUC21e-142M0RUC2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P21920_0011e-143(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-34C2H2 family protein