PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P22590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 201aa    MW: 23327.9 Da    PI: 5.6749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P22590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.91.5e-30161462128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87 
                             p+GfrF+Pt  e++++yL +kv+g+ l+ +  ++e+d+y+++P +Lp  ++ ++++w yfF+++++  + g  + r+t +g Wk + 
  GSMUA_Achr11P22590_001  16 PAGFRFRPTGIEILKYYLLNKVSGQALPYDGGFEEMDVYRHDPDQLPIDISDGHSRWaYFFVSTATPDEDGYDNVRSTPHGLWKLQR 102
                             89***************************888***************98888999999***************************** PP

                     NAM  88 kdkevlsk..kgelvglkktLvfykgrap.kgektdWvmheyrl 128
                              d++v +   +++++g k+++vfy+ +a+ ++ +t W m+eyrl
  GSMUA_Achr11P22590_001 103 PDRPVQDDddDDRVIGYKRSFVFYSTKAHcRSARTGWRMNEYRL 146
                             ******98777888**********775542678*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3310165IPR003441NAC domain
PROSITE profilePS5100533.67615167IPR003441NAC domain
PfamPF023654.3E-1816146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MASSEPQSPL PSYEFPAGFR FRPTGIEILK YYLLNKVSGQ ALPYDGGFEE MDVYRHDPDQ  60
LPIDISDGHS RWAYFFVSTA TPDEDGYDNV RSTPHGLWKL QRPDRPVQDD DDDDRVIGYK  120
RSFVFYSTKA HCRSARTGWR MNEYRLSRKF DRSKDDSQIS ACEIYILMED RASNHDYKAC  180
SERSKSQVER RMLVPVDSAQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-181514615140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385253.11e-149PREDICTED: NAC domain-containing protein 35-like
TrEMBLM0RUI91e-148M0RUI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P22590_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-19NAC domain containing protein 35