PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 189aa    MW: 20615.7 Da    PI: 6.9534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12250455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            +h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++++k+L+
  GSMUA_Achr11P23340_001  2 THIAVERNRRRQMNEHLAVLRSLMPDS---YIQRGDQASIVGGAIDFVKELE 50
                            8**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-11154No hitNo description
SuperFamilySSF474592.62E-16168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.767149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTHIAVERNR RRQMNEHLAV LRSLMPDSYI QRGDQASIVG GAIDFVKELE QLLQSLEAQK  60
RTLQQRQAGK PESSPATADG GSRSSSSHSH GDQLLPALAD IEVTLIETHA NVRILSPKRP  120
HQLVKIVCGL QDLKLSILHL SLTTLDAMVL YSLSVKVEEG CNLATVDDIA AAIHRMLCLI  180
QAEATAAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384704.11e-119PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-58BH096_ARATH; Transcription factor bHLH96
TrEMBLM0RUR41e-134M0RUR4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23340_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]