PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 481aa    MW: 52803.6 Da    PI: 7.8948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.9e-08326354435
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskaps 35 
                             +h e+Er+RR+++N++f  Lr ++P++    +
  GSMUA_Achr11P23410_001 326 NHVEAERQRREKLNQRFYALRAVVPNLQ---A 354
                             799***********************73...2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-3469227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.118322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8325356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-6325353No hitNo description
SuperFamilySSF474597.2E-9325380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5326353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNLWADDNAS MMEAFMAGTD LVHGFPWATP PPTPPRPSGM ASSLDPGRAI VGPPTPSSPP  60
SAFFNQETLQ QRLQALIEGA RESWTYGIFW QSSVDAATGT SFLGWGDGYY KGCEEDKRKQ  120
RAASTASAAD QDHRKRVLRE LNSLISGGVS LAPDEIVEEE ALCAGAPYWI AGAGRLSAAS  180
CERARHAQLF GIQTMVCAPV GSGVLELGST DTILYNLDLM GKIRVLFNFS SRDAPDTAAA  240
PSWLAQQSNP TSAMQIPKVH DDHQRQIHQL QHQSSCSKPQ AQSFMSKEFD FSGFASNGAS  300
SRAVEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP NLQALEANKE  360
DLQAQIQGLK KERESAPTQR PESNLKTMNG GGRCHGVEIE VKLLGSEALI RLQSQKRNHP  420
AAVLMAALQD LDLEVHYASV SVVKDLMIQQ ATVKMSRRVF TQEQLSSVLY ARLAAEALSS  480
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-44642304195Transcription factor MYC3
4rqw_B2e-44642304195Transcription factor MYC3
4rs9_A2e-44642304195Transcription factor MYC3
4yz6_A2e-44642304195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307315KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384727.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM0RUS10.0M0RUS1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.15e-67NACL-inducible gene 1