PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P23650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 312aa MW: 34281.6 Da PI: 5.1162

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P23650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41	4.2e-13	143	201	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs qRK +i eLe+kv++L++e ++L +l +k +++l +e+ GSMUA_Achr11P23650_001 143 KRAKRILANRQSAARSKQRKANYIVELERKVQTLQTEATTLSAQLTLFQKDISELATEN 201 9****************************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.4E-16	139	203	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.473	141	204	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-12	143	198	No hit	No description
Pfam	PF00170	2.7E-12	143	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.78E-11	143	197	No hit	No description
CDD	cd14703	1.42E-22	144	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPSKSLIPPP TTPNPNLPCP NAPVVPPSMC GGGGDLDPAP HFGGPHHRRA HSELAFRISE 60 DLHLGPASED DVFRTYMDVE KIGSGMEDGE APASEAAEHS GPRDRNSVDA SSSRGEGVFG 120 DVMEAKKAMP PEKLAELAVI DPKRAKRILA NRQSAARSKQ RKANYIVELE RKVQTLQTEA 180 TTLSAQLTLF QKDISELATE NAGLKLWLQS MEQQAQLNDG VNDGLKQEVE RLKIATGEKV 240 ERSEAYNLGL MNLPFLPFVM PSQEQPRNHQ RGFEFQAQIQ QSQLDNNSVP SNMMQQGHLM 300 VLPGMLSFEL ED

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384770.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	3e-77	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	M0RUU5	0.0	M0RUU5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P23650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-73	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]