PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 432aa    MW: 47901 Da    PI: 6.8358
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17112161155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_Achr11P23870_001 112 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAHTAARAYDRAAIKFRG 161
                             78*******************......55************************998 PP
2AP240.19.3e-13204254155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  GSMUA_Achr11P23870_001 204 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 254
                             79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-16112170IPR016177DNA-binding domain
PfamPF008474.3E-9112161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-17113170IPR001471AP2/ERF domain
PROSITE profilePS5103217.517113169IPR001471AP2/ERF domain
SMARTSM003801.5E-31113175IPR001471AP2/ERF domain
CDDcd000184.12E-23113171No hitNo description
SuperFamilySSF541711.83E-16204263IPR016177DNA-binding domain
CDDcd000181.87E-24204264No hitNo description
PfamPF008473.3E-8204254IPR001471AP2/ERF domain
PROSITE profilePS5103215.106205262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-15205262IPR001471AP2/ERF domain
SMARTSM003807.8E-32205268IPR001471AP2/ERF domain
PRINTSPR003671.4E-5206217IPR001471AP2/ERF domain
PRINTSPR003671.4E-5244264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEFDLNAVSP GESSAEASNS SEASRNAAAA AAFRFDIVRR RPADDDDEDV KEGSVSPQPG  60
ISTLQLFPRA ADVTAGTVDG AAEAEAEAKL LLHRQQQQPV RKSRRGPRSR SSQYRGVTFY  120
RRTGRWESHI WDCGKQIYLG GFDTAHTAAR AYDRAAIKFR GLDADINFNL SDYEEDLKQM  180
KNLTKEEFVH ILRRHSTGFA RGSSKFRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE  240
AARAYDKAAI KCNGREAVTN FEPSLYEGET LTEPEVASED VDLNLRISQP DLHNLKKDGN  300
SSGTNFCRGS FEAMQMGNTQ ADSHYHLGYD PHLATTPCHP HWWASSYPGF FLSIAEKGNQ  360
QRPEMGSQVL PNWAWQMHDP TPLPSASSAA SSGFSTATMM ATVPPPRAAP PPSNTHHYHF  420
PPSASTNYDF AN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384810.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ8H4431e-133AP23_ORYSJ; APETALA2-like protein 3
TrEMBLM0RUW70.0M0RUW7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-91related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]