PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P23970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 141aa    MW: 15642 Da    PI: 10.5501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P23970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000983860123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C+++F++   L  H  +H
  GSMUA_Achr11P23970_001 38 FECKTCSRRFPTFQALGGHRTSH 60
                            89**********99998888877 PP
2zf-C2H210.80.00157597123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++Cg  F     L  H+r+H
  GSMUA_Achr11P23970_001 75 HRCSICGAGFALGQALGGHMRRH 97
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-42661IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-53564No hitNo description
SMARTSM003550.363860IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9723865IPR007087Zinc finger, C2H2
PfamPF139127.5E-123862IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-57398No hitNo description
SMARTSM003550.197597IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-97598IPR007087Zinc finger, C2H2
PROSITE profilePS501579.30775102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKRSRDAEDA ELLQLSLSFG VKPPAKIHRR TKTADGEFEC KTCSRRFPTF QALGGHRTSH  60
KRPRIDRSTP KPSMHRCSIC GAGFALGQAL GGHMRRHKAM DGELMRSDGE ELDLAMAPLQ  120
VNLFDVAGRS SSHSPLLQLF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384823.11e-100PREDICTED: zinc finger protein ZAT11-like
TrEMBLM0RUX72e-98M0RUX7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P23970_0013e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-18C2H2 family protein