PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P24420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 359aa MW: 37160.5 Da PI: 9.5676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P24420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.1e-39	86	146	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ GSMUA_Achr11P24420_001 86 PEPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 146 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-37	70	142	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	90	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVFPSVPVFL DPPNWNQVSS LLPCLIFSSD AFHQQAHQQG NSGRGGGEAS QLPPGLAAPR 60 PDGGMAGLMR PGSMADRARL AKIPQPEPGL KCPRCDSTNT KFCYFNNYSL SQPRHFCKTC 120 RRYWTRGGAL RNVPVGGGCR RNKRTKSTAG GSSSKSSNTT TQTGASSSSS TATSSGVGGA 180 IASTTLLASQ LPFMASLHPL PDFAATNFGV SFSGIQPVDT LDYQLGGGGS SAPGGGVGME 240 NLRLQQMQQF SLIGGLDLPQ PPAPAPTPAS GLFSFVGDGG GFIGGSSTGQ AQTKPTNSGL 300 ITQLASVKMD DSQQLLGFPR PYLGVSRNDQ FWSGGGSSSS TGGWMTDLSG FNSSSSNIF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVFPSVPVFL DPPNWNQVSS LLPCLIFSSD AFHQQAHQQG NSGRGGGEAS QLPPGLAAPR  60
PDGGMAGLMR PGSMADRARL AKIPQPEPGL KCPRCDSTNT KFCYFNNYSL SQPRHFCKTC  120
RRYWTRGGAL RNVPVGGGCR RNKRTKSTAG GSSSKSSNTT TQTGASSSSS TATSSGVGGA  180
IASTTLLASQ LPFMASLHPL PDFAATNFGV SFSGIQPVDT LDYQLGGGGS SAPGGGVGME  240
NLRLQQMQQF SLIGGLDLPQ PPAPAPTPAS GLFSFVGDGG GFIGGSSTGQ AQTKPTNSGL  300
ITQLASVKMD DSQQLLGFPR PYLGVSRNDQ FWSGGGSSSS TGGWMTDLSG FNSSSSNIF

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018675922.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like isoform X1
TrEMBL	M0RV22	0.0	M0RV22_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P24420_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-43	Dof family protein