PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P24600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 227aa MW: 24095.9 Da PI: 4.7196

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P24600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	107.5	6.9e-34	36	96	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e +l+cp C+s nt fCyynnyslsqPr fCk+Crr+WtkGG+lr vPvGgg+r+nkksss GSMUA_Achr11P24600_001 36 EPSLECPGCESINTNFCYYNNYSLSQPRNFCKGCRRHWTKGGSLRTVPVGGGCRNNKKSSS 96 56789****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	25	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-28	38	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.18	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MASIPPPEVV RGCPKGTTAV AEALQQEEMV RPPVPEPSLE CPGCESINTN FCYYNNYSLS 60 QPRNFCKGCR RHWTKGGSLR TVPVGGGCRN NKKSSSSRGA RGQQAFDTDS TPPLCNALLP 120 SLLAIASLQK QQSAHQAFLL GNPTPEPGWS AGFPDILTTA FLDGTGDPSG FLYSINRGGY 180 GDADSNEEEQ QLLLPFRGGL GGATTTTAAA FDVEDEDDKT LIGSLLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385276.1	1e-167	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	M0RV40	1e-166	M0RV40_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P24600_001	1e-167	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	8e-32	TARGET OF MONOPTEROS 6