PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P24690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 241aa    MW: 27144.7 Da    PI: 6.7724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P24690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-162875148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed llv+ v+++G ++W+  a+  g++Rt+k+c++rw +yl
  GSMUA_Achr11P24690_001 28 KGPWTEQEDSLLVRFVRLFGERRWDCLAKVSGLNRTGKSCRLRWVNYL 75
                            79********************************************97 PP
2Myb_DNA-binding56.56.3e-1882126248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             gr+T+eE+ l +d+++++G+  W++Iar+++ gRt++++k++w++++
  GSMUA_Achr11P24690_001  82 GRMTPEEEHLVLDLHAKWGNS-WSRIARYLP-GRTDNEIKNYWRTHM 126
                             89*****************99.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4422375IPR017930Myb domain
SuperFamilySSF466891.09E-2926122IPR009057Homeodomain-like
SMARTSM007173.7E-142777IPR001005SANT/Myb domain
PfamPF002491.4E-142875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-192982IPR009057Homeodomain-like
CDDcd001674.75E-103075No hitNo description
PROSITE profilePS5129426.07176130IPR017930Myb domain
SMARTSM007177.2E-1580128IPR001005SANT/Myb domain
PfamPF002497.5E-1682125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2383129IPR009057Homeodomain-like
CDDcd001671.20E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSPPSIYVK AGRRARLAMA PKAEEMRKGP WTEQEDSLLV RFVRLFGERR WDCLAKVSGL  60
NRTGKSCRLR WVNYLHPDLI HGRMTPEEEH LVLDLHAKWG NSWSRIARYL PGRTDNEIKN  120
YWRTHMRRKA QERKTSASPS SSSSSSSSSS SSCSPAAAAQ GVVQSEGVKV YSMDEIWDEI  180
AAADSVSGLT AEECGLACPP PLPCPMWEDC SESLWKVDDE YKMATVLPVD DLMISDFHYS  240
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27251301105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384914.11e-132PREDICTED: transcription factor MYB59-like
SwissprotQ4JL842e-75MYB59_ARATH; Transcription factor MYB59
TrEMBLM0RV491e-178M0RV49_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P24690_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.34e-69myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]