PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P25140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 478aa    MW: 53024.6 Da    PI: 7.8845
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P25140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.3e-10194234545
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                             k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  GSMUA_Achr11P25140_001 194 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 234
                             7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-8190253IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415192236IPR004827Basic-leucine zipper domain
CDDcd147083.48E-22194246No hitNo description
PfamPF001706.1E-7194234IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7194237No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-7195238No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF141442.3E-32276351IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLNHNRVHVL KCLQYEPGFP YSKSNCMHTC TASDCFDFFI SSTEENTTHP SRVSDFGLLE  60
QSTVFHIGAA SDIRRGEIYL AASVKQSGQT FTSNISQSGV LSNPLASSGT TPAVRVEPLT  120
SPQQKGQQPK LVSFSSSQFE NWGESTMADA SPRTDTSTDV DTDDKNQRSE RGQLAAIAAS  180
DSSDRSKDKT LDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ  240
GIFISSSGDQ THAMGGNGAL AFDVEYARWL DDHNRQISEL RTAVNAHASE NDLRVIVDGI  300
MTHYEEIFRL KGVAAKADVF HILSGMWKTP AERCFLWLGG FRSSELLKLL VNQLEPLTEQ  360
QLMGICNLQQ SSQQAEDALS QGMEALQQSL AETLAGSLGP SGSTGNVANY MGQMAMAMGK  420
LGTLETFLRQ ADNLRQQTLQ QMIRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5825520.0KF582552.1 Musa acuminata AAA Group cultivar Cavendish bzip transcription factor (TGA1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384968.10.0PREDICTED: transcription factor TGA2.2 isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM0RV940.0M0RV94_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P25140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-147bZIP family protein