PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P25600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 562aa    MW: 61846.1 Da    PI: 9.7315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P25600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183079255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +++GVr ++ +gr++AeIrdp++   ++r++lg+f +aeeAa+a++aa+++++g
  GSMUA_Achr11P25600_001 30 RFRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFASAEEAARAYDAAALRFRG 79
                            69*******.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-162987No hitNo description
SMARTSM003807.9E-363093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-293087IPR001471AP2/ERF domain
PROSITE profilePS5103224.0393087IPR001471AP2/ERF domain
PfamPF008473.9E-123079IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-213087IPR016177DNA-binding domain
PRINTSPR003672.1E-93142IPR001471AP2/ERF domain
PRINTSPR003672.1E-95369IPR001471AP2/ERF domain
Gene3DG3DSA:3.40.1500.101.7E-136247562IPR001260Coproporphyrinogen III oxidase, aerobic
SuperFamilySSF1028868.11E-131248562IPR001260Coproporphyrinogen III oxidase, aerobic
PfamPF012181.1E-133254562IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92276292IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92293314IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92346370IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92385407IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92422451IPR001260Coproporphyrinogen III oxidase, aerobic
PROSITE patternPS010210426450IPR018375Coproporphyrinogen III oxidase, conserved site
PRINTSPR000731.2E-92494521IPR001260Coproporphyrinogen III oxidase, aerobic
PRINTSPR000731.2E-92522548IPR001260Coproporphyrinogen III oxidase, aerobic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006779Biological Processporphyrin-containing compound biosynthetic process
GO:0009735Biological Processresponse to cytokinin
GO:0055114Biological Processoxidation-reduction process
GO:0009570Cellular Componentchloroplast stroma
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004109Molecular Functioncoproporphyrinogen oxidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MPSFSLEDAG KRAPPLVWRN PRVAELKEAR FRGVRKRPWG RYAAEIRDPV KKTRVWLGTF  60
ASAEEAARAY DAAALRFRGL SAKTNFPCPG PPHALANPFS PTSSSGTVES STPSSKATAA  120
AAVLTPLDLE LGHASARSSL PRSPVPMDRA VALTGFMGVG MGGSMPAAAA AASLVLFAPS  180
RSSSSSPRTL RRPSLLPLRR ATVAPSRPRI PRLVAVRANV AIEKETPEEE RPETFLRAAD  240
GHHGAASASV RARFERMIRE VQDEVCAAIE AADGGGKFKE DVWSRPGGGG GISRVLQDGG  300
VWEKAGVNVS VVYGVMPPEA YRAAKGEAVS GNGNSSVKAG PVPFFAAGIS SVLHPKNPFA  360
PTLHFNYRYF ETDATKDAPG APRQWWFGGG TDFTPAYIFE EDVKHFHRVQ KEACDKFDPS  420
FYPRFKKWCD DYFFIKHRGE RRGLGGIFFD DLNDYDQEML LAFSTECARS VVGAYVPIIE  480
RRKDTPFTEQ HKAWQQLRRG RYVEFNLVYD RGTTFGLKTG GRIESILVSL PLTARWEYDH  540
KPEEGSEEWK LLDACINPKE WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2aex_A1e-12524856238345Coproporphyrinogen III oxidase, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385034.10.0PREDICTED: coproporphyrinogen-III oxidase 1, chloroplastic-like isoform X2
SwissprotP350550.0HEM6_SOYBN; Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic
TrEMBLM0RVE00.0M0RVE0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P25600_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.13e-20ethylene response factor 8
Publications ? help Back to Top
  1. Madsen O,Sandal L,Sandal NN,Marcker KA
    A soybean coproporphyrinogen oxidase gene is highly expressed in root nodules.
    Plant Mol. Biol., 1993. 23(1): p. 35-43
    [PMID:8219054]