PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P00430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family E2F/DP
Protein Properties Length: 346aa    MW: 37629.9 Da    PI: 7.0206
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P00430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.3e-2796176271
                E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e              d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  GSMUA_Achr1P00430_001  96 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVTEftdpnnnpgsqdqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 176
                            689********...*****999*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.6E-1244346IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.7E-4791181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-3495176IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-2597176IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-2298177IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.65E-45181284IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.89E-43182294No hitNo description
SMARTSM011385.1E-77183344IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-42184317IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDEGSKSTAS FPKVASGSRS SLGTPAFSGG HSASTSGSAG SPSSRSDPAA RTPASENTLV  60
RLNHLDIQGE DEGTPEGAVS GKKKKRGVRA VGGDKSGRGL RQFSMKVCEK VESKGRTTYN  120
EVADELVTEF TDPNNNPGSQ DQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT  180
SLNDIEELKA ERTGLKNRIE KKTAYLQELQ DQFIGLQNLV QRNEQLYGSG HIPSGGVALP  240
FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV LKAMGLCERG QHDGAPEPSS  300
NGGDCSSMSG MYQHETSQGS RSSSMGKMIT SPPKPGILKA RVKNEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-4289181193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388689.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-139DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM0RVV10.0M0RVV1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-122Transcription factor DP