PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P01260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 154aa    MW: 16507.7 Da    PI: 8.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P01260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000253557123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C  C+ksF++   L  H  +H
  GSMUA_Achr1P01260_001 35 YECRTCSKSFPSFQALGGHRASH 57
                           99**********99999998887 PP
2zf-C2H214.97.6e-057395123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++Cg  F++   L  H+r+H
  GSMUA_Achr1P01260_001 73 HECSICGLEFNSGQALGGHMRRH 95
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.08E-93495No hitNo description
SMARTSM003550.123557IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9513562IPR007087Zinc finger, C2H2
PfamPF139122.0E-123559IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM003550.0167395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2867395IPR007087Zinc finger, C2H2
PfamPF139123.1E-127396IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MANCLILLAR GRASDAGLKA EGLGGEDGGA GRNLYECRTC SKSFPSFQAL GGHRASHKKP  60
NMNSFPSIKP KIHECSICGL EFNSGQALGG HMRRHRPLTT STIQGAANKE RAFLSLDLNL  120
PAPADDEQDE LRRPTSPAFT FVLAAPSALV DCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396915.13e-94PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X47e-34ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0RW341e-109M0RW34_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P01260_0011e-110(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-36C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]