PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P01550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 294aa    MW: 32039 Da    PI: 9.613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P01550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-06526223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           +C+ C ++Fs+ + L rH+r+H
  GSMUA_Achr1P01550_001  5 TCNVCFRRFSDGYALGRHMRSH 26
                           6********************9 PP
2zf-C2H212.60.00042209231123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+Cp C ++Fs+   L  H r+H
  GSMUA_Achr1P01550_001 209 YECPFCFRVFSSGQALGGHKRSH 231
                            99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.473431IPR007087Zinc finger, C2H2
SMARTSM003550.2426IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-4526IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-8526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-8152179No hitNo description
PfamPF139121.2E-11156181IPR007087Zinc finger, C2H2
SMARTSM003550.14157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767157179IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-5206233No hitNo description
PfamPF139121.1E-9208231IPR007087Zinc finger, C2H2
SMARTSM003550.067209231IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.889209231IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDGRTCNVCF RRFSDGYALG RHMRSHVTST APRSRSCRPG DSHSSVSSGH AASERDVEEE  60
KAVEVGLSCG LRVNLRKNFR LVDSSETESP RARRLRTKKR RLGATALSPD QPDAEPASSV  120
SYATPDEDVA LCLMMLSRDS WAAARSRPPL RRGRSRHQCD ACKKVFRSYQ ALGGHRASHK  180
RINGCVPAVE RRVASSADGV DTNADARVYE CPFCFRVFSS GQALGGHKRS HFMSSVTNKS  240
PSSTSPVPAV TNYVRSFGLI DLNLPAPAVD DLELSAISDT EVPFPTSTCG KHAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405969.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM0RW630.0M0RW63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P01550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-40C2H2-like zinc finger protein