PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P01620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 234aa    MW: 24831.3 Da    PI: 4.749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P01620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1690132147
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                            + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++
  GSMUA_Achr1P01620_001  90 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHD 132
                            68*****998.**********843...6*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1190133IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1691134IPR016177DNA-binding domain
SMARTSM003803.0E-1991159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2391132IPR001471AP2/ERF domain
PROSITE profilePS5103218.26891133IPR001471AP2/ERF domain
PRINTSPR003678.2E-1192103IPR001471AP2/ERF domain
CDDcd000182.13E-2392132No hitNo description
PRINTSPR003678.2E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEELLLQEC EANTCSSSSS SSSTITSSAS SSSLSSMATS CCPNASPELP GQSSNKEKKT  60
SRSGSKRQAQ AAPAGGGGGA EKRSKDGKHP VYRGVRMRNW GKWVSEIREP RKKSRIWLGT  120
FPTAEMAARA HDLPRPATAA PKDVQAAAAL AAAATFCGPC TTSQCSAPDQ AEQPDPTTPP  180
SGDDDALFDL PDLFLGLREG FCYSSSSSSS AWLPSTEEDG VEFRIEEPFL WEDN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1575753e-39KC157575.1 Musa AB Group CBF7-1 protein (CBF7-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401144.11e-116PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ71e-35ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM0RW701e-168M0RW70_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P01620_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]