PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P02080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 547aa    MW: 58979.3 Da    PI: 9.3973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P02080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0584106123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C+ C+k F r  nL+ H r H
  GSMUA_Achr1P02080_001  84 FICEVCNKGFQREQNLQLHRRGH 106
                            89*******************88 PP
2zf-C2H2157.1e-05160182123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+Lk H + +
  GSMUA_Achr1P02080_001 160 WKCDKCSKRYAVQSDLKAHSKIC 182
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-683106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-883106No hitNo description
PfamPF121712.7E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9984106IPR007087Zinc finger, C2H2
SMARTSM003550.005284106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5147181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.1E-8155180No hitNo description
PROSITE profilePS501578.642160188IPR007087Zinc finger, C2H2
SMARTSM0035562160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MASASSSSPF FGVREDEHHT QVMQQQSSSA PPPQAAAPVK KRRSLPGNPC KYLTCLLHKS  60
CMISDPDAEV IALSPRTLLA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKTTKEV  120
RRRVYLCPEP TCVHHEPSRA LGDLTGVKKH FCRKHGEKKW KCDKCSKRYA VQSDLKAHSK  180
ICGTREYRCD CGTLFSRRDS FITHRAFCDA LVQEGARLPT ALNTLGGHLY GNSNMVLGSA  240
QVSPQITSLH DQSRPSTDLL HLGRAGSSQF EHLIAPSKPL SFGAPQPPPY SSPFYLGGGG  300
SDKGINGDTP SHHSLLQTAA GLFNLGFFSN DSNTCSNAMN KNVQPMPGDQ IYDSNRSTEQ  360
STLFAGNLVD EHMAGGIASR YSTLIKNEPV MLPQQLSATA LLQKAAQIGA TSSGGSSLLG  420
GFGSSASPGK TANYSMNGLF GSSTGMAAFE GSCTTAGGRH VQENTGFGRF NGNMRNMNEG  480
KYNLSSTGNL GGSDGLTRDF LGVGSMVRSM GPGISQREQH HGINMSPLDP DMRSGSSSRY  540
FAGGSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33156223370Zinc finger protein JACKDAW
5b3h_F4e-33156223370Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206031e-137AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409711.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_009409771.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_018685466.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic isoform X1
TrEMBLM0RWB60.0M0RWB6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P02080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-111indeterminate(ID)-domain 4