PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P02520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 242aa MW: 24943.3 Da PI: 7.4716

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P02520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.9	2.3e-40	39	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ GSMUA_Achr1P02520_001 39 PCGACKFLRRKCMAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAAVTICYEAQARLRDPVYGCVAHIFALQQQV 126 7*********************9989******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+ael++l+++ GSMUA_Achr1P02520_001 127 VNLQAELSYLQAH 139 ******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.093	38	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-39	39	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSGNPSPSIE GATGGGSGGA GGGGGTSGGG GSAGGGSGPC GACKFLRRKC MAGCIFAPYF 60 DSEQGAAHFA AVHKVFGASN VSKLLLHIPA HKRLDAAVTI CYEAQARLRD PVYGCVAHIF 120 ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PLPPPLVVAP IPFAISDLPS AANLPTAVDL 180 STLFNPLVQP AWTLQQQQQQ LSTSTRSPCE RSGFGGGDLQ ALARELLDRH RMATSEPPPD 240 SR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	35	140	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	35	140	7	111	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	31	SGGAGGGGGTSGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391108.1	1e-175	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	3e-74	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	M0RWG0	1e-174	M0RWG0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P02520_001	1e-174	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-69	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]