PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 254aa    MW: 28531.2 Da    PI: 8.0306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr1P03140_001 14 KGPWSPEEDSKLKEFIEKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding44.34.2e-1469111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr1P03140_001  69 GEFSEEEDRIICSLFATIGSR-WSVIASQLP-GRTDNDIKNHWNT 111
                            78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.395962IPR017930Myb domain
SuperFamilySSF466893.55E-2811109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241569IPR009057Homeodomain-like
CDDcd001676.70E-101662No hitNo description
PROSITE profilePS5129422.57563117IPR017930Myb domain
SMARTSM007172.1E-1367115IPR001005SANT/Myb domain
PfamPF002497.0E-1369111IPR001005SANT/Myb domain
CDDcd001671.45E-970113No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC SLFATIGSRW SVIASQLPGR TDNDIKNHWN TKLKKKLLGI  120
APSQRKPQGF PATSHDMWKS FPTAAISSDL LQVPYHQHHT ITFSSHDGSC TRFSDVKDGL  180
EDIYGAMEGN KLFLEGGCQV DNNGPEYNHE EIKQLLISTF GHCNNGSMNN NPIANTFLTA  240
NMKRSDLDDE YVSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390359.10.0PREDICTED: transcription factor MYB34-like
TrEMBLM0RWM20.0M0RWM2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36