PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 167aa    MW: 18190.8 Da    PI: 7.5055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-0581103123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  Fs+   L  H+r+H
  GSMUA_Achr1P03310_001  81 HECSICGSEFSSGQALGGHMRRH 103
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-83050IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4113153IPR007087Zinc finger, C2H2
SMARTSM003550.183153IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.1E-1031103No hitNo description
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-474103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.4E-1280105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.76481103IPR007087Zinc finger, C2H2
SMARTSM003550.0281103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MIIAVESLLQ RSLILPQIWP PEAATTTGCA YECKTCSRWF PSFQALGGHQ SIHDHLLQTS  60
TNPFSHPVRG VEQSNTKTKT HECSICGSEF SSGQALGGHM RRHRPPVAAI PESQDIKKER  120
FLLPLDLNLP APINDDAQIP PPPASPFAPG RPLVFAASAS ALVDCRY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390198.12e-92PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-28ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0RWN91e-120M0RWN9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03310_0011e-121(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-31C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]