PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 330aa    MW: 36087 Da    PI: 8.4684
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-3176177196
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae+h       +e+++ l++ d++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +
  GSMUA_Achr1P03600_001  76 FDKVVTPSDVGKLNRLVIPKQHAERHfpldPTANEKGMLLSFDDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDVVSFGR 163
                            89*************************9994445699*************************************************95 PP

                            -.SS.SEE..EEEE CS
                     B3  85 d.gr.sefelvvkv 96 
                              g+  + +l++ +
  GSMUA_Achr1P03600_001 164 GvGEsGRDHLYIDW 177
                            54554555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4170183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-2972182IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-2674161No hitNo description
PROSITE profilePS5086314.60776181IPR003340B3 DNA binding domain
SMARTSM010191.4E-2176181IPR003340B3 DNA binding domain
PfamPF023621.8E-2876180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEFTARRSDG FYMTEEEKHE EASQHPSFIP LSSSSSSPST SAAFGWHVGP SDTAGNGAAG  60
DSGNESNFFT EKEHMFDKVV TPSDVGKLNR LVIPKQHAER HFPLDPTANE KGMLLSFDDR  120
TGKSWRFRYS YWNSSQSYVM TKGWSRFVKE KRLDAGDVVS FGRGVGESGR DHLYIDWKRR  180
QENHDLPRAP RAPLTGVSMA RPLGPWGVSR FFIPPAAIYD HHRPGFGYSP MSSGTSSGGQ  240
FLFVGSTSAG PPQFGAQASA KRVRLFGVNL DCPESKGNAQ LPSGLSSASA PQLQSSSTLQ  300
FLPLPHGRTE SSVAPSSTIT DHRLSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-62711803113B3 domain-containing transcription factor NGA1
5os9_B2e-62711803113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391640.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR92e-77Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLM0RWR80.0M0RWR8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]