PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P03650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 570aa MW: 60948.2 Da PI: 8.3967

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P03650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	323.6	4.1e-99	194	570	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++ Ll+ A+a+ +g+l++a+a La ++ a+p+gd+ qRl+a++ L +rl++ +++ ++a++ + s e++aa+++++++sP GSMUA_Achr1P03650_001 194 RQMLLDTATAIGEGNLHAATANLAVIKAAANPRGDAEQRLTAMMYATLFSRLNNLQTGSSHAVAELR-----SPEHFAATQMLYDLSP 276 689*************************************************5555554444333.....679********* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelg 173 ++k+++++aN+aIlea++ e +Hi+Df++++G Q++a+l+aL++R + p++R+T+v++p+s ++ l+ +ger++k+Ae++g GSMUA_Achr1P03650_001 277 CFKLAFIAANHAILEATKDEPNIHILDFEVGHGSQYAAFLHALTQRLRHRPTIRVTAVVDPSSPftniNSGGLRVVGERIEKLAERVG 364 ********************************************************998889999*************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 v ++f+v v++r e+l+ +L ++pgE+l+Vnl++ l r+ desvsl+++rde+L+ v+ l+P++v+++eqe++++++ F +rf+ea+ GSMUA_Achr1P03650_001 365 VGLRFSV-VSRRPEELDAVALGCEPGEVLIVNLAFVLSRVADESVSLANPRDEILRRVRALQPRLVTLAEQEINTSTAAFPARFAEAC 451 **9.7*************************************************************************** PP GRAS 262 eyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 +y al++slea+++++ er+ E+ l+r++vn+va eg+er+er+e l+kWr+r+++aG+kpvpl+ + ++ +k+ l+ + GSMUA_Achr1P03650_001 452 VHYGALLESLEATAAAAVqkgfAERARAEAG-LARRAVNAVAREGQERVERCEVLGKWRARMGMAGLKPVPLGPSSVEPVKYRLESAG 538 ******999666555677899999999.999************************************************* PP GRAS 346 .sdgyrveeesgslv..lgWkdrpLvsvSaWr 374 + g++++ee g + +gW++r L+++SaWr GSMUA_Achr1P03650_001 539 sNPGFTIKEEVGGVAlgFGWRGRVLTVLSAWR 570 99**99877764689**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.784	167	547	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-96	194	570	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MASGFPGREL GLGAGGRGGT LLKRTLADME IQHQQQQMQL QLQHQHQHQQ SLFLRSVKQR 60 TLAAPSIATL SPAVVGAFPC NSFSAATQSS VSTSSTVTSA GFAFPRRPEL LAGSVPEVRS 120 SGSLRDQLKE LERRLLLDDE EEEASASGSA VTHAAWSEAI QSLISSSSTI SSSASCSPPS 180 SMPSPPPPPT GTSRQMLLDT ATAIGEGNLH AATANLAVIK AAANPRGDAE QRLTAMMYAT 240 LFSRLNNLQT GSSHAVAELR SPEHFAATQM LYDLSPCFKL AFIAANHAIL EATKDEPNIH 300 ILDFEVGHGS QYAAFLHALT QRLRHRPTIR VTAVVDPSSP FTNINSGGLR VVGERIEKLA 360 ERVGVGLRFS VVSRRPEELD AVALGCEPGE VLIVNLAFVL SRVADESVSL ANPRDEILRR 420 VRALQPRLVT LAEQEINTST AAFPARFAEA CVHYGALLES LEATAAAAVQ KGFAERARAE 480 AGLARRAVNA VAREGQERVE RCEVLGKWRA RMGMAGLKPV PLGPSSVEPV KYRLESAGSN 540 PGFTIKEEVG GVALGFGWRG RVLTVLSAWR

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MASGFPGREL GLGAGGRGGT LLKRTLADME IQHQQQQMQL QLQHQHQHQQ SLFLRSVKQR  60
TLAAPSIATL SPAVVGAFPC NSFSAATQSS VSTSSTVTSA GFAFPRRPEL LAGSVPEVRS  120
SGSLRDQLKE LERRLLLDDE EEEASASGSA VTHAAWSEAI QSLISSSSTI SSSASCSPPS  180
SMPSPPPPPT GTSRQMLLDT ATAIGEGNLH AATANLAVIK AAANPRGDAE QRLTAMMYAT  240
LFSRLNNLQT GSSHAVAELR SPEHFAATQM LYDLSPCFKL AFIAANHAIL EATKDEPNIH  300
ILDFEVGHGS QYAAFLHALT QRLRHRPTIR VTAVVDPSSP FTNINSGGLR VVGERIEKLA  360
ERVGVGLRFS VVSRRPEELD AVALGCEPGE VLIVNLAFVL SRVADESVSL ANPRDEILRR  420
VRALQPRLVT LAEQEINTST AAFPARFAEA CVHYGALLES LEATAAAAVQ KGFAERARAE  480
AGLARRAVNA VAREGQERVE RCEVLGKWRA RMGMAGLKPV PLGPSSVEPV KYRLESAGSN  540
PGFTIKEEVG GVALGFGWRG RVLTVLSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-39	212	570	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389832.1	0.0	PREDICTED: scarecrow-like protein 8
TrEMBL	M0RWS3	0.0	M0RWS3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P03650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	2e-88	SCARECROW-like 8